Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024114.1 Corchorus olitorius cultivar O-4 contig24147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60333

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1050--1079
15
2.0
15
93
0
51
43
26
10
20
1.83
3141--3303
75
2.2
75
81
4
186
29
17
18
34
1.94
3795--3838
23
1.9
23
100
0
88
11
4
40
43
1.61
16205--16256
17
3.0
16
76
23
52
9
5
3
80
0.99
17385--17433
21
2.3
21
82
6
55
40
16
28
14
1.87
17877--17910
16
2.1
17
88
5
52
35
14
8
41
1.77
20199--20247
26
1.9
25
87
4
71
53
10
20
16
1.72
22934--23065
65
2.0
65
94
2
230
46
6
12
33
1.69
25912--25965
11
4.9
11
77
8
56
22
11
12
53
1.70
25962--26004
6
6.6
7
84
10
56
39
0
0
60
0.97
33842--33909
28
2.4
28
73
11
77
38
4
8
48
1.54
35660--35690
2
15.5
2
100
0
62
51
0
0
48
1.00
36696--36760
34
1.9
34
100
0
130
50
3
10
35
1.53
43738--43808
35
2.1
34
97
2
133
56
14
7
22
1.62
44537--44568
15
2.1
15
100
0
64
28
6
25
40
1.79
44944--45076
72
1.9
72
96
1
250
24
11
29
34
1.90
48508--48544
19
1.9
19
100
0
74
24
5
21
48
1.71
52298--52368
29
2.5
29
93
2
117
18
39
18
23
1.92
52641--52684
18
2.4
18
85
7
63
4
25
20
50
1.67
52690--52777
18
5.3
18
71
25
77
5
23
21
48
1.71
52617--52806
47
4.1
47
87
5
251
6
25
20
47
1.74
52630--52806
93
1.9
94
87
3
259
5
26
20
47
1.72

Tables:   1

The End!