Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024119.1 Corchorus olitorius cultivar O-4 contig24152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4796
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34


Found at i:1977 original size:31 final size:31

Alignment explanation


    Indices: 1900--2003  Score: 108
    Period size: 31  Copynumber: 3.4  Consensus size: 31

       1890 GTCCCCTCCG

                    *                     * 
       1900 TCAAGGG-TAAAATGTCTTGAATTTAGGAAGT
          1 TCAAGGGACAAAATGTCTTGAATTTA-GAAAT

               *   *                  *    
       1931 TCATGGGGCAAAATGTCTTGAATTTAAAAAT
          1 TCAAGGGACAAAATGTCTTGAATTTAGAAAT

                                            
       1962 TCAAGGGACAAAATGT-TCTG-ATTT-GAAAT
          1 TCAAGGGACAAAATGTCT-TGAATTTAGAAAT

             *           
       1991 TTAAGGGACAAAA
          1 TCAAGGGACAAAA

       2004 CGTTCCTTAA


Statistics
Matches: 63,  Mismatches: 8, Indels: 6
        0.82            0.10        0.08

Matches are distributed among these distances:
  29   16  0.25
  30    5  0.08
  31   25  0.40
  32   17  0.27

ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30


Consensus pattern (31 bp):   
TCAAGGGACAAAATGTCTTGAATTTAGAAAT
Done.