Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024126.1 Corchorus olitorius cultivar O-4 contig24159, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98232

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
207--261
25
2.2
25
83
9
67
36
1
0
61
1.06
214--270
25
2.2
25
84
9
71
33
1
1
63
1.15
1996--2043
19
2.6
18
83
6
60
72
0
25
2
0.95
1985--2071
27
3.2
27
69
21
65
71
0
25
3
1.02
2054--2106
17
3.0
17
81
10
54
69
0
22
7
1.13
2073--2119
18
2.6
19
83
9
55
65
0
21
12
1.25
6727--6774
21
2.2
22
92
7
89
22
31
12
33
1.91
10939--11041
31
3.5
28
76
8
80
35
14
18
31
1.91
20496--20542
16
2.9
16
76
17
53
63
6
12
17
1.48
24171--24199
15
2.0
15
93
6
51
51
20
0
27
1.47
24758--24818
30
2.0
30
84
6
79
32
16
8
42
1.78
37523--37632
39
2.9
39
89
2
170
24
19
34
21
1.96
44835--44864
7
4.3
7
91
0
51
26
3
0
70
1.03
45530--45576
15
2.7
19
75
25
66
44
4
10
40
1.59
46357--46431
27
2.6
28
78
14
82
22
13
21
42
1.87
57606--57683
2
40.0
2
80
5
61
44
3
1
50
1.28
59550--59650
43
2.3
43
93
0
166
35
14
15
33
1.89
60471--60917
151
3.0
151
91
0
732
48
21
11
18
1.79
63146--63362
108
2.0
109
94
2
384
45
16
6
31
1.73
67560--67609
21
2.4
21
100
0
100
46
0
24
30
1.53
68924--69470
114
4.8
113
82
5
579
38
13
14
33
1.85
70400--70432
12
2.5
13
85
14
50
57
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81142--81208
2
35.5
2
78
21
74
49
0
2
47
1.16
81133--81208
24
3.0
26
92
7
138
50
0
3
46
1.20
82531--82601
27
2.6
28
86
2
90
60
11
9
18
1.57
87081--87120
11
3.7
11
84
15
57
37
5
20
37
1.74
87085--87132
22
2.2
22
85
7
62
41
6
16
35
1.74
88876--88924
21
2.4
21
77
16
57
67
6
8
18
1.37
91025--91062
20
1.9
20
89
10
60
26
2
31
39
1.70
91935--91987
27
2.0
27
88
7
81
20
37
18
22
1.94
92491--92545
28
2.0
28
86
6
78
10
9
29
50
1.68
92491--92553
30
2.2
28
82
5
72
11
7
30
50
1.66
94452--94505
19
2.6
21
77
19
60
38
18
3
38
1.69
95297--95331
18
2.0
18
88
5
54
37
11
5
45
1.64
95618--95688
8
8.9
8
100
0
142
38
0
11
50
1.38

Tables:   1

The End!