Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024129.1 Corchorus olitorius cultivar O-4 contig24162, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3217
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:186 original size:20 final size:21

Alignment explanation


    Indices: 161--199  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        151 AGTTAGATTA

                       *         
        161 AATTAGGAT-CTTTCATAATT
          1 AATTAGGATACATTCATAATT

                               
        181 AATTAGGATACATTCATAA
          1 AATTAGGATACATTCATAA

        200 CATGCATCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38


Consensus pattern (21 bp):   
AATTAGGATACATTCATAATT

Found at i:2485 original size:15 final size:16

Alignment explanation


    Indices: 2461--2500  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       2451 AGAGGTTGAA

                 *          
       2461 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       2476 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       2492 AGAAAACAA
          1 AGAAAACAA

       2501 AGCAAAGTAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.