Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024144.1 Corchorus olitorius cultivar O-4 contig24177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8678
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:8618 original size:29 final size:28

Alignment explanation


    Indices: 8583--8678  Score: 111
    Period size: 29  Copynumber: 3.3  Consensus size: 28

       8573 TAAAGTATGC

                                         
       8583 AAAATGACCAAACTGCCCCAGAATGTGTA
          1 AAAATGACCAAA-TGCCCCAGAATGTGTA

              *                *         
       8612 AAGATGACCGAAATGCCCCCGAATGTGTA
          1 AAAATGACC-AAATGCCCCAGAATGTGTA

                               * *  *  * 
       8641 AAAATGACCAAAATGCCCCGGGATATGCA
          1 AAAATGACC-AAATGCCCCAGAATGTGTA

                     
       8670 AAAATGACC
          1 AAAATGACC


Statistics
Matches: 58,  Mismatches: 8, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
  29   55  0.95
  30    3  0.05

ACGTcount: A:0.41, C:0.24, G:0.20, T:0.16


Consensus pattern (28 bp):   
AAAATGACCAAATGCCCCAGAATGTGTA
Done.