Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024148.1 Corchorus olitorius cultivar O-4 contig24181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3897

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
406--438
11
2.9
11
95
4
57
81
12
6
0
0.85
403--444
11
3.8
11
87
6
50
85
9
4
0
0.72
784--842
22
2.7
22
84
7
84
71
0
15
13
1.15
809--837
13
2.1
14
93
6
51
72
0
13
13
1.13
1117--1215
50
2.0
50
91
0
162
32
16
15
36
1.89
1770--2014
68
3.6
68
91
2
393
23
28
20
28
1.99
1770--2031
137
1.9
136
92
3
438
22
27
20
29
1.98
2093--2123
16
1.9
16
93
0
53
35
22
9
32
1.87
2124--2477
47
7.5
47
85
3
489
18
25
20
35
1.95
2124--2473
94
3.7
94
95
0
637
19
25
20
35
1.95
2688--2787
49
2.0
49
100
0
200
30
16
30
24
1.96

Tables:   1

The End!