Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024149.1 Corchorus olitorius cultivar O-4 contig24182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2894
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28


Found at i:2122 original size:19 final size:19

Alignment explanation


    Indices: 2098--2148  Score: 102
    Period size: 19  Copynumber: 2.7  Consensus size: 19

       2088 GTCCAACAAA

                               
       2098 ATGGTTTTCAAAAAGAGTC
          1 ATGGTTTTCAAAAAGAGTC

                               
       2117 ATGGTTTTCAAAAAGAGTC
          1 ATGGTTTTCAAAAAGAGTC

                         
       2136 ATGGTTTTCAAAA
          1 ATGGTTTTCAAAA

       2149 GGTTTTGATA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   32  1.00

ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33


Consensus pattern (19 bp):   
ATGGTTTTCAAAAAGAGTC
Done.