Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002415.1 Corchorus olitorius cultivar O-4 contig02415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2279
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1296 original size:54 final size:54

Alignment explanation


    Indices: 1209--1331  Score: 183
    Period size: 54  Copynumber: 2.3  Consensus size: 54

       1199 ATGAAGGGAT

                                    *   *     * *                 
       1209 TGAAGTTACTACAAAAATTGAACAGGTTGCTACAGAGTCAAATTTTGCTATGTA
          1 TGAAGTTACTACAAAAATTGAACAAGTTACTACAAACTCAAATTTTGCTATGTA

             *             *                         *            
       1263 TTAAGTTACTACAAAGATTGAACAAGTTACTACAAACTCAAGTTTTGCTATGTA
          1 TGAAGTTACTACAAAAATTGAACAAGTTACTACAAACTCAAATTTTGCTATGTA

                           
       1317 TGAAGTTACTACAAA
          1 TGAAGTTACTACAAA

       1332 CCCCTAAAAT


Statistics
Matches: 61,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  54   61  1.00

ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32


Consensus pattern (54 bp):   
TGAAGTTACTACAAAAATTGAACAAGTTACTACAAACTCAAATTTTGCTATGTA
Done.