Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024151.1 Corchorus olitorius cultivar O-4 contig24184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43529

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76--175
35
2.8
33
72
21
92
26
16
20
38
1.92
4957--5096
68
2.0
69
90
4
221
24
11
14
50
1.75
6631--6664
16
2.1
17
88
5
52
41
0
23
35
1.55
11648--11691
15
3.0
15
87
9
56
68
2
0
29
1.02
13629--13822
44
4.4
44
73
9
146
43
8
11
36
1.73
13569--13821
22
11.5
22
71
9
115
43
9
12
35
1.74
13838--14064
22
10.6
22
67
14
120
38
10
15
35
1.82
13923--14046
44
2.8
44
84
4
153
40
10
13
35
1.79
13922--14064
44
3.3
41
79
9
133
39
9
13
36
1.78
15326--15370
24
1.9
24
86
4
65
37
11
13
37
1.80
15254--15399
22
6.9
21
71
12
102
38
10
13
37
1.79
22155--22236
42
2.0
42
97
0
155
51
10
8
29
1.67
35230--35328
38
2.6
38
91
0
171
39
3
21
36
1.69
41210--41250
14
2.9
14
88
0
55
9
9
17
63
1.51
41215--41255
14
2.9
14
88
0
55
9
9
19
60
1.55
41214--41259
14
3.3
15
82
11
53
8
10
23
56
1.61
42005--42115
55
2.0
55
98
0
213
36
9
8
45
1.65
42754--42868
56
2.0
57
94
1
205
33
24
1
40
1.66
42932--43014
42
2.0
42
95
0
148
31
7
15
45
1.73

Tables:   1

The End!