genome.fa.s24154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024154.1 Corchorus olitorius cultivar O-4 contig24187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89918

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--307	151	1.9	148	90	5	416	27	18	18	34	1.95
8832--8861	14	2.1	14	93	0	51	23	0	10	66	1.21
11009--11046	1	38.0	1	94	0	67	0	2	0	97	0.18
17049--17108	31	1.9	31	96	0	111	45	11	13	30	1.79
19348--19526	85	2.1	85	96	0	331	48	23	10	17	1.77
19884--19937	27	2.0	27	88	0	81	33	16	9	40	1.80
21886--21910	2	12.5	2	100	0	50	52	0	0	48	1.00
23302--23330	1	29.0	1	100	0	58	100	0	0	0	0.00
23828--23883	29	1.9	29	89	7	87	58	0	32	8	1.29
26575--26617	16	2.8	15	77	19	52	9	23	34	32	1.87
27202--27235	2	17.0	2	100	0	68	50	0	0	50	1.00
27744--28303	66	8.5	64	75	12	290	41	14	19	24	1.89
27719--28228	66	7.7	65	74	10	315	40	14	19	25	1.89
27873--28378	66	7.7	66	79	7	397	42	15	19	22	1.88
42276--42307	15	2.1	15	94	0	55	37	21	12	28	1.90
43953--44012	27	2.2	27	96	0	111	41	26	11	20	1.86
44044--44201	53	3.0	53	94	0	280	24	27	27	21	1.99
45713--45819	25	4.3	25	77	7	92	22	26	29	21	1.99
45726--45823	25	3.9	25	83	0	124	21	24	31	22	1.98
45722--45823	50	2.0	50	86	3	143	20	25	31	22	1.98
45842--45910	25	2.8	25	79	0	84	24	26	26	23	2.00
45756--45923	90	1.9	90	81	2	203	21	23	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51558--51634	29	2.7	28	83	2	109	45	22	14	18	1.85
52003--52280	50	5.5	49	90	5	414	26	26	11	34	1.91
52030--52287	102	2.5	102	98	0	498	27	26	12	33	1.92
52030--52288	52	5.1	51	95	3	468	28	26	11	33	1.92
52300--52534	50	4.7	50	95	1	400	28	13	28	29	1.94
52617--52824	78	2.7	78	92	2	337	34	12	20	32	1.90
53214--53363	50	3.0	50	86	1	210	36	14	16	34	1.88
53951--54022	28	2.6	27	82	6	74	13	0	11	75	1.06
53958--54031	33	2.2	34	83	11	91	14	0	10	74	1.07
54002--54036	18	1.9	18	88	0	52	20	0	5	74	1.02
63570--63646	29	2.7	28	83	2	109	45	22	14	18	1.85
64369--64495	22	5.9	22	80	11	138	14	25	2	58	1.48
64369--64495	43	2.9	43	74	16	127	14	25	2	58	1.48
64370--64494	65	1.9	64	87	4	180	13	25	2	58	1.48
64474--64609	56	2.4	57	87	5	202	22	18	5	53	1.64
64585--64803	22	10.1	22	75	7	180	13	25	4	56	1.55
64841--64948	22	4.9	23	79	5	118	12	25	2	58	1.48
64694--65093	145	2.8	145	86	4	531	17	24	4	54	1.59
64983--65201	22	10.1	22	78	3	203	13	26	5	55	1.58
64529--65259	398	1.8	396	92	1	1241	16	23	4	54	1.61
65012--65208	65	3.0	63	81	2	196	13	26	3	56	1.53
64983--65202	86	2.5	87	89	2	345	13	26	5	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65214--65308	28	3.3	28	66	11	75	25	18	6	49	1.71
65181--65546	58	6.3	58	79	11	410	21	18	5	54	1.64
65295--65336	22	1.9	22	95	0	75	11	16	4	66	1.40
65239--65591	121	3.0	123	79	13	466	21	17	5	55	1.62
65366--65551	56	3.3	56	86	8	270	23	17	4	54	1.62
65202--65527	179	1.8	178	83	5	421	23	17	5	53	1.64
68627--68829	54	3.8	54	76	5	203	24	25	27	23	2.00
72933--72959	14	1.9	14	100	0	54	29	29	22	18	1.97
72947--73100	28	5.5	28	86	6	204	31	34	18	14	1.92
73926--74018	27	3.4	27	92	0	159	41	26	12	18	1.86
75029--75117	40	2.2	40	75	16	103	34	16	34	13	1.88
75038--75459	88	4.8	86	80	6	406	37	19	27	15	1.92
75213--75361	40	3.5	40	75	19	149	40	20	24	14	1.90
75252--75419	48	3.7	48	70	22	148	38	20	26	14	1.91
75536--75902	43	8.5	43	87	1	518	34	18	27	19	1.95
81386--81463	35	2.2	35	81	4	86	21	23	28	26	1.99
81445--81601	25	6.3	25	78	0	134	21	22	30	26	1.98
84695--84730	19	1.9	18	88	5	54	33	22	2	41	1.68
86038--86071	2	17.0	2	93	0	59	50	2	0	47	1.16
86910--86958	11	4.5	11	80	10	64	8	4	16	71	1.26
86910--86958	22	2.2	23	88	3	73	8	4	16	71	1.26
87223--87264	15	2.7	15	96	3	75	66	14	7	11	1.43

Tables:   1

The End!