Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024155.1 Corchorus olitorius cultivar O-4 contig24188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9938
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:2738 original size:11 final size:11

Alignment explanation


    Indices: 2724--2762  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

       2714 CCGGCCATTA

                       
       2724 CCCGGCTATGG
          1 CCCGGCTATGG

                  *  **
       2735 CCCGGCCATTA
          1 CCCGGCTATGG

                       
       2746 CCCGGCTATGG
          1 CCCGGCTATGG

                  
       2757 CCCGGC
          1 CCCGGC

       2763 CATCCTCACA


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.10, C:0.44, G:0.31, T:0.15


Consensus pattern (11 bp):   
CCCGGCTATGG

Found at i:2741 original size:22 final size:22

Alignment explanation


    Indices: 2714--2765  Score: 104
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       2704 GCCAACTCAG

                                  
       2714 CCGGCCATTACCCGGCTATGGC
          1 CCGGCCATTACCCGGCTATGGC

                                  
       2736 CCGGCCATTACCCGGCTATGGC
          1 CCGGCCATTACCCGGCTATGGC

                    
       2758 CCGGCCAT
          1 CCGGCCAT

       2766 CCTCACACAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.13, C:0.42, G:0.27, T:0.17


Consensus pattern (22 bp):   
CCGGCCATTACCCGGCTATGGC
Done.