Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024160.1 Corchorus olitorius cultivar O-4 contig24193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29776

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1372--1420
22
2.1
23
81
7
55
22
24
10
42
1.84
1493--1575
38
2.3
38
85
6
109
25
22
16
34
1.95
6668--6703
19
1.9
18
88
5
54
30
22
8
38
1.83
8615--8658
22
2.0
22
86
8
63
22
31
20
25
1.98
9885--9924
18
2.2
19
86
4
55
37
22
0
40
1.54
10748--10782
18
1.9
18
88
0
52
17
0
28
54
1.43
12580--12650
27
2.7
26
84
6
90
42
23
16
16
1.89
14343--14403
31
2.0
31
86
0
86
22
13
8
55
1.64
18037--18195
78
2.0
78
100
0
318
39
16
16
27
1.90
20489--20535
22
2.1
22
92
0
76
31
12
29
25
1.93
24466--24850
169
2.3
173
82
7
452
37
15
9
37
1.79
25054--25150
49
2.0
49
85
4
133
44
7
20
27
1.78
28015--28066
11
5.1
10
77
17
54
40
1
19
38
1.63
28026--28061
19
1.9
18
88
5
54
41
0
22
36
1.54

Tables:   1

The End!