Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024164.1 Corchorus olitorius cultivar O-4 contig24197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34138

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
417--522
55
1.9
55
94
0
185
25
7
21
45
1.78
921--963
22
2.0
22
86
4
61
55
0
0
44
0.99
921--969
18
2.5
21
83
9
59
57
0
0
42
0.99
11732--11770
2
19.5
2
94
0
51
41
0
7
51
1.31
13780--13817
11
3.5
11
89
10
51
39
0
2
57
1.12
21250--21298
24
2.0
25
88
4
73
63
8
8
20
1.48
21987--22011
11
2.3
11
100
0
50
68
8
16
8
1.38
22606--22664
30
2.0
30
86
6
84
35
16
6
40
1.76
23199--23263
17
3.8
17
89
0
85
21
24
21
32
1.98
25954--25984
2
15.5
2
100
0
62
51
0
0
48
1.00
26521--26561
18
2.3
18
82
0
55
75
7
7
9
1.18
30117--30175
30
2.0
30
86
6
84
35
16
6
40
1.76
33410--33487
27
2.9
27
98
0
147
17
14
23
44
1.85
33756--33785
13
2.3
13
94
0
51
83
10
0
6
0.81

Tables:   1

The End!