Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024170.1 Corchorus olitorius cultivar O-4 contig24203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6920
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33


Found at i:687 original size:19 final size:18

Alignment explanation


    Indices: 663--702  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        653 ATTAATTTTA

                  *            
        663 TTTTCCTTTTCCTTTTCCT
          1 TTTTCCCTTT-CTTTTCCT

                           *  
        682 TTTTCCCTTTCTTTTTCT
          1 TTTTCCCTTTCTTTTCCT

               
        700 TTT
          1 TTT

        703 CTTCTTTTTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   10  0.53
  19    9  0.47

ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72


Consensus pattern (18 bp):   
TTTTCCCTTTCTTTTCCT

Found at i:792 original size:15 final size:15

Alignment explanation


    Indices: 772--801  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        762 TTTTTAATTT

                           
        772 CTGTTTGGGCCTAGG
          1 CTGTTTGGGCCTAGG

                           
        787 CTGTTTGGGCCTAGG
          1 CTGTTTGGGCCTAGG

        802 ACCCAAACAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.20, G:0.40, T:0.33


Consensus pattern (15 bp):   
CTGTTTGGGCCTAGG
Done.