Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024178.1 Corchorus olitorius cultivar O-4 contig24211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24548

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
432--518
27
3.3
27
72
3
77
39
26
14
19
1.91
4887--4928
15
2.7
15
96
3
75
66
14
7
11
1.43
8188--8254
21
3.1
21
80
2
80
13
20
47
17
1.81
8387--8428
21
2.0
21
86
9
59
9
23
54
11
1.66
10626--10738
25
4.3
25
71
25
81
32
11
7
47
1.69
10598--10714
54
2.2
53
80
9
130
35
11
7
44
1.70
10680--10750
25
2.9
24
91
6
108
32
14
9
43
1.78
10613--10767
79
2.0
79
82
5
188
36
14
8
41
1.76
11054--11095
15
2.7
15
92
3
66
64
14
9
11
1.50
15631--15715
34
2.5
34
80
1
98
31
18
18
30
1.96
21605--21678
37
2.0
38
89
7
116
55
10
21
12
1.67
22518--23331
59
13.8
59
92
0
1360
25
15
15
44
1.85
23561--23890
145
2.3
145
88
1
464
17
20
20
41
1.90
23557--23965
29
14.1
29
74
8
267
18
19
21
41
1.91

Tables:   1

The End!