Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024181.1 Corchorus olitorius cultivar O-4 contig24214, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6005
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:4192 original size:301 final size:301

Alignment explanation


    Indices: 3645--4246  Score: 1141
    Period size: 301  Copynumber: 2.0  Consensus size: 301

       3635 CTTGCTAAAC

                                                                   *         
       3645 AACTGATATACCTTGTCCTTTTCCGCTATGAGTGACTGTACCACCTCTTTCATTTCTCTCATCTC
          1 AACTGATATACCTTGTCCTTTTCCGCTATGAGTGACTGTACCACCTCTTTCATTTATCTCATCTC

                                                         *                   
       3710 TTGGCGGAATAATGGTTCAGACTCTGGCTCATTAGGCTTGAGAATCTCTTCAGATGTGCTAAATT
         66 TTGGCGGAATAATGGTTCAGACTCTGGCTCATTAGGCTTGAGAATATCTTCAGATGTGCTAAATT

                                                                             
       3775 GATGGATATTTTCGGCCATGATGTTGAGCAGCTTCCTCGCTTCTGTAGGTGTTTTAAGTGTTAGG
        131 GATGGATATTTTCGGCCATGATGTTGAGCAGCTTCCTCGCTTCTGTAGGTGTTTTAAGTGTTAGG

                                                                             
       3840 CTACCTCCACTGGTTGCATCAATGTAGACTCGATCTTCATAAAACAATCCATCATAGAATTGTCG
        196 CTACCTCCACTGGTTGCATCAATGTAGACTCGATCTTCATAAAACAATCCATCATAGAATTGTCG

                                 *                   
       3905 TATCAAGAGTTCCTCGCTGATTTTGTGGTAGGGGCAACTTT
        261 TATCAAGAGTTCCTCGCTGATGTTGTGGTAGGGGCAACTTT

                                                                             
       3946 AACTGATATACCTTGTCCTTTTCCGCTATGAGTGACTGTACCACCTCTTTCATTTATCTCATCTC
          1 AACTGATATACCTTGTCCTTTTCCGCTATGAGTGACTGTACCACCTCTTTCATTTATCTCATCTC

                              *                                              
       4011 TTGGCGGAATAATGGTTCGGACTCTGGCTCATTAGGCTTGAGAATATCTTCAGATGTGCTAAATT
         66 TTGGCGGAATAATGGTTCAGACTCTGGCTCATTAGGCTTGAGAATATCTTCAGATGTGCTAAATT

                                                 *                           
       4076 GATGGATATTTTCGGCCATGATGTTGAGCAGCTTCCTTGCTTCTGTAGGTGTTTTAAGTGTTAGG
        131 GATGGATATTTTCGGCCATGATGTTGAGCAGCTTCCTCGCTTCTGTAGGTGTTTTAAGTGTTAGG

                                          *             *                    
       4141 CTACCTCCACTGGTTGCATCAATGTAGACTTGATCTTCATAAAATAATCCATCATAGAATTGTCG
        196 CTACCTCCACTGGTTGCATCAATGTAGACTCGATCTTCATAAAACAATCCATCATAGAATTGTCG

                                                     
       4206 TATCAAGAGTTCCTCGCTGATGTTGTGGTAGGGGCAACTTT
        261 TATCAAGAGTTCCTCGCTGATGTTGTGGTAGGGGCAACTTT

       4247 CACAGATCTT


Statistics
Matches: 294,  Mismatches: 7, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 301  294  1.00

ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36


Consensus pattern (301 bp):   
AACTGATATACCTTGTCCTTTTCCGCTATGAGTGACTGTACCACCTCTTTCATTTATCTCATCTC
TTGGCGGAATAATGGTTCAGACTCTGGCTCATTAGGCTTGAGAATATCTTCAGATGTGCTAAATT
GATGGATATTTTCGGCCATGATGTTGAGCAGCTTCCTCGCTTCTGTAGGTGTTTTAAGTGTTAGG
CTACCTCCACTGGTTGCATCAATGTAGACTCGATCTTCATAAAACAATCCATCATAGAATTGTCG
TATCAAGAGTTCCTCGCTGATGTTGTGGTAGGGGCAACTTT
Done.