Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024186.1 Corchorus olitorius cultivar O-4 contig24219, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79097

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5703--5783
40
2.0
40
97
0
153
32
13
16
38
1.87
7130--7233
51
2.1
50
87
1
145
28
9
16
45
1.79
7905--7983
32
2.5
32
91
0
122
26
26
18
27
1.98
9691--9781
46
2.0
45
93
6
159
45
14
14
26
1.83
9692--9761
22
3.2
22
65
23
58
45
14
14
25
1.82
15078--15145
26
2.7
26
88
2
93
55
26
7
10
1.59
16879--16939
26
2.3
26
77
0
68
60
3
27
8
1.41
17961--18011
10
5.1
10
72
9
50
25
1
17
54
1.53
18795--18827
15
2.3
15
89
5
50
51
15
6
27
1.66
23074--23100
12
2.2
12
100
0
54
44
29
0
25
1.54
24511--24599
37
2.4
37
88
5
126
19
17
7
55
1.66
27447--27490
23
2.0
22
82
8
54
20
6
22
50
1.72
32626--32697
29
2.4
29
88
2
99
36
4
20
38
1.72
40093--40144
3
17.3
3
100
0
104
67
0
0
32
0.91
47562--47590
13
2.2
13
100
0
58
37
13
10
37
1.79
50916--50984
4
17.0
4
71
14
52
69
0
8
21
1.15
50919--50984
12
5.7
13
76
18
58
69
0
9
21
1.15
50970--51077
24
4.6
24
75
15
84
61
0
15
23
1.34
51044--51078
14
2.4
15
90
4
54
65
0
8
25
1.21
52416--52605
54
3.5
54
78
7
172
33
21
15
30
1.94
59192--59242
28
1.9
27
84
11
70
35
9
7
47
1.66
62167--62199
15
2.1
16
88
5
50
39
12
0
48
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63557--63629
36
2.0
36
91
0
119
43
5
16
34
1.71
64085--64177
36
2.6
36
89
0
141
39
20
19
20
1.92
64161--64587
38
11.0
38
75
10
222
37
16
19
25
1.93
64074--64537
38
12.2
37
74
13
263
37
17
20
24
1.94
64074--64331
77
3.4
76
75
9
208
38
18
20
22
1.94
64162--64577
192
2.1
196
83
4
513
37
16
19
25
1.93
70601--70661
24
2.5
24
97
0
113
36
13
27
22
1.92
78761--78835
28
2.6
28
91
2
114
16
17
28
38
1.91

Tables:   1

The End!