Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024190.1 Corchorus olitorius cultivar O-4 contig24223, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20117

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1530--1566
18
2.1
18
94
0
65
54
5
29
10
1.57
2247--2305
10
6.3
10
81
16
65
0
15
0
84
0.62
2251--2309
16
3.6
16
84
6
75
0
15
0
84
0.62
2251--2305
23
2.5
22
90
3
83
0
14
0
85
0.60
2247--2308
25
2.5
25
82
10
83
0
14
0
85
0.60
6336--6423
33
2.7
32
85
7
122
46
21
6
25
1.76
10128--10410
44
6.5
44
82
4
331
39
9
0
49
1.41
10161--10529
30
12.9
29
69
21
137
39
10
0
50
1.40
10128--10440
88
3.6
87
83
7
388
39
9
0
50
1.40
10128--10529
112
3.2
131
82
10
380
39
10
0
50
1.40
10299--10522
112
2.0
112
100
0
448
39
10
0
50
1.37
10211--10440
14
16.1
14
70
16
109
39
9
0
51
1.34
10415--10528
43
2.6
44
81
5
124
40
10
0
49
1.37
18311--18338
14
2.0
14
100
0
56
14
14
0
71
1.15

Tables:   1

The End!