Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024192.1 Corchorus olitorius cultivar O-4 contig24225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3975

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
323--415
31
3.1
31
89
6
147
32
13
11
41
1.81
565--632
29
2.3
30
87
5
93
44
11
19
25
1.84
1600--1637
16
2.3
18
82
17
55
15
7
2
73
1.17
1615--1773
79
2.0
80
95
1
284
34
10
11
43
1.75
2115--2179
22
3.2
22
64
28
61
50
9
3
36
1.50
2087--2197
39
2.8
39
97
0
204
48
9
2
38
1.51
2121--2182
17
3.4
17
68
20
52
50
11
3
35
1.55
3199--3254
12
4.5
13
71
8
53
8
39
46
5
1.58
3193--3265
37
2.0
37
94
0
128
10
39
42
6
1.67
3336--3360
11
2.3
11
100
0
50
76
0
24
0
0.80
3346--3396
21
2.4
21
83
12
68
76
0
17
5
0.98
3462--3631
84
2.0
84
100
0
340
40
14
14
31
1.85

Tables:   1

The End!