Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024195.1 Corchorus olitorius cultivar O-4 contig24228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40280

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3907--3962
29
1.9
29
89
7
87
44
3
16
35
1.65
12691--12882
82
2.3
80
82
11
221
33
13
16
35
1.88
12737--12883
41
3.6
41
85
3
215
33
14
15
36
1.89
12920--12949
15
1.9
16
93
6
53
63
10
6
20
1.47
17443--17482
16
2.4
18
84
16
59
40
10
10
40
1.72
23348--23382
11
3.2
11
83
0
52
77
17
5
0
0.96
26827--27081
37
7.1
35
82
8
291
27
16
16
39
1.90
26827--27081
72
3.5
72
87
6
358
27
16
16
39
1.90
26827--27121
110
2.7
106
78
13
314
27
16
16
39
1.90
26827--27121
72
4.1
70
86
9
339
27
16
16
39
1.90
26828--27124
35
8.2
34
78
14
221
27
16
16
39
1.90
34087--34140
24
2.2
24
96
3
99
12
16
27
42
1.85
35666--35701
17
2.1
17
89
0
54
50
13
0
36
1.43
35696--35739
2
22.0
2
81
9
54
45
4
0
50
1.22

Tables:   1

The End!