Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024197.1 Corchorus olitorius cultivar O-4 contig24230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1728
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36


Found at i:1084 original size:21 final size:21

Alignment explanation


    Indices: 1058--1099  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1048 TGGCTATTTT

                                 
       1058 GCTAGACTATACTTTAGCCCA
          1 GCTAGACTATACTTTAGCCCA

                                 
       1079 GCTAGACTATACTTTAGCCCA
          1 GCTAGACTATACTTTAGCCCA

       1100 CAATTGATGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29


Consensus pattern (21 bp):   
GCTAGACTATACTTTAGCCCA
Done.