Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024203.1 Corchorus olitorius cultivar O-4 contig24236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118707

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6572--6650
2
40.0
2
80
2
88
50
2
2
44
1.29
10104--10140
18
2.1
18
100
0
74
37
29
10
21
1.88
14840--14986
48
3.1
48
97
0
276
31
23
18
26
1.97
14872--14909
19
2.0
19
89
0
58
28
23
21
26
1.99
14920--14957
19
2.0
19
94
0
67
28
21
21
28
1.98
15013--15109
36
2.8
36
84
3
126
31
25
10
31
1.89
19323--19374
26
2.0
26
88
7
79
25
21
13
40
1.89
19473--19504
15
2.1
15
100
0
64
46
34
12
6
1.67
22716--22748
2
16.5
2
100
0
66
51
48
0
0
1.00
22887--22921
17
2.1
17
100
0
70
37
22
5
34
1.78
25966--25994
12
2.4
12
100
0
58
0
6
51
41
1.28
26715--26763
22
2.3
22
78
3
55
12
53
0
34
1.39
27275--27331
16
3.6
15
77
11
60
8
8
26
56
1.59
27287--27343
16
3.6
15
79
9
60
12
8
22
56
1.63
27275--27339
32
2.1
32
85
2
87
10
7
24
56
1.59
28110--28141
16
2.0
16
93
0
55
43
21
25
9
1.82
29159--29229
33
2.2
33
84
0
97
36
21
25
16
1.94
32543--32768
38
5.9
38
92
0
353
28
18
23
29
1.98
37514--37563
25
2.0
26
92
4
84
64
14
12
10
1.51
37639--37789
33
4.6
33
80
3
162
29
15
20
33
1.94
41495--41545
22
2.3
22
86
0
66
37
13
5
43
1.69
41558--41685
22
5.8
22
81
0
130
40
10
12
35
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41558--41684
66
1.9
66
81
0
155
40
11
12
36
1.79
43353--43392
7
5.9
7
82
5
55
50
0
0
50
1.00
47726--47751
4
6.5
4
100
0
52
53
23
0
23
1.46
50852--50898
23
2.0
23
84
8
60
10
17
17
55
1.69
55707--55855
30
5.0
30
90
0
208
32
16
16
33
1.92
59156--59196
4
10.8
4
79
10
50
51
2
17
29
1.58
59156--59210
26
2.1
27
82
3
67
49
9
12
29
1.72
60035--60131
46
2.2
45
83
8
130
38
22
5
34
1.77
62364--62401
11
3.5
11
85
10
51
57
2
0
39
1.12
64556--64871
41
7.5
41
72
19
183
38
24
16
19
1.92
64637--64685
25
1.9
26
91
4
82
34
26
18
20
1.95
64662--64988
35
8.7
35
79
12
255
40
23
17
19
1.92
66921--66951
2
15.5
2
100
0
62
48
0
0
51
1.00
67078--67102
13
1.9
13
100
0
50
56
0
0
44
0.99
69398--69436
19
2.1
19
95
0
69
23
5
17
53
1.63
79212--79301
33
2.7
33
84
8
119
18
21
10
50
1.76
86742--86776
3
12.0
3
93
6
63
65
0
0
34
0.93
87352--87406
26
2.1
26
96
0
101
30
12
12
43
1.80
89549--89597
18
2.7
19
87
6
66
69
0
26
4
1.06
91259--91449
94
2.0
94
97
0
364
37
8
18
35
1.83
92267--92291
6
4.2
6
100
0
50
32
0
52
16
1.44
103343--103399
28
2.0
29
96
3
107
24
7
22
45
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104870--104903
2
17.0
2
100
0
68
50
0
0
50
1.00
106259--106329
36
1.9
37
85
5
99
33
15
19
30
1.93
106534--106700
89
1.9
89
91
0
271
39
13
16
29
1.88
112762--112797
19
1.9
18
88
5
54
27
22
8
41
1.82
117517--117550
10
3.5
10
96
4
61
35
38
0
26
1.57
118339--118372
16
2.2
16
89
5
52
17
5
14
61
1.52

Tables:   1

The End!