Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024206.1 Corchorus olitorius cultivar O-4 contig24239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49579

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
135--201
31
2.2
31
89
5
102
22
17
10
49
1.77
471--503
16
2.1
17
88
11
52
48
0
0
51
1.00
534--673
31
4.6
31
79
5
133
38
11
17
32
1.85
812--878
31
2.2
31
92
5
111
20
17
11
49
1.79
4390--4705
128
2.6
119
80
9
343
37
18
19
23
1.94
8474--8807
90
3.6
90
84
3
389
32
18
17
32
1.94
8479--8815
60
5.5
60
90
1
386
31
18
17
32
1.94
8544--8807
30
8.7
30
90
0
375
31
19
17
31
1.95
14201--14235
16
2.2
16
90
10
54
22
11
34
31
1.90
19039--19106
20
3.5
20
68
22
63
29
16
4
50
1.64
20413--20474
18
3.2
18
80
15
54
59
3
1
35
1.23
23493--23546
6
9.0
6
100
0
108
16
50
16
16
1.79
32112--32151
20
2.0
20
85
4
55
2
5
27
65
1.27
36431--36469
18
2.1
19
85
4
53
10
17
7
64
1.48
38926--38955
15
2.1
14
93
6
51
33
0
0
66
0.92
39935--39964
15
2.1
14
93
6
51
66
0
0
33
0.92
41923--42130
33
6.6
30
84
5
166
34
19
15
30
1.93
41991--42129
31
4.5
31
85
7
176
33
18
15
32
1.93
41991--42130
61
2.3
60
84
7
174
32
18
15
32
1.93
44183--44246
33
1.9
33
83
0
83
31
25
21
21
1.98

Tables:   1

The End!