Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024214.1 Corchorus olitorius cultivar O-4 contig24247, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35804

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
648--908
106
2.5
105
92
2
418
42
9
7
40
1.66
1864--2124
106
2.5
104
93
2
425
40
8
9
41
1.68
2436--2468
13
2.4
14
90
5
50
69
3
12
15
1.30
3775--3828
23
2.3
23
84
12
67
31
11
33
24
1.90
3823--3880
23
2.3
27
72
27
72
13
12
32
41
1.82
3830--3878
23
2.2
22
96
3
89
14
12
34
38
1.83
18319--18344
11
2.4
11
100
0
52
69
7
15
7
1.35
21309--21363
23
2.4
23
85
11
69
32
10
32
23
1.90
21360--21412
23
2.3
23
87
3
81
18
11
30
39
1.86
23193--23238
24
1.9
24
90
0
74
13
34
6
45
1.69
30728--30786
29
2.0
29
100
0
118
16
18
13
50
1.77
33353--33382
14
2.1
15
93
6
53
76
0
23
0
0.78

Tables:   1

The End!