Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024216.1 Corchorus olitorius cultivar O-4 contig24249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2606
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37


Found at i:2308 original size:27 final size:27

Alignment explanation


    Indices: 2270--2347  Score: 111
    Period size: 27  Copynumber: 2.9  Consensus size: 27

       2260 GCACTTAAGT

                                       
       2270 CATCCATGGGCATTTTAGTCATTTGCA
          1 CATCCATGGGCATTTTAGTCATTTGCA

                            *          
       2297 CATCCATGGGCATTTTTGTCATTTGCA
          1 CATCCATGGGCATTTTAGTCATTTGCA

            *  *  *         *       
       2324 TATTCAGGGGCATTTTGGTCATTT
          1 CATCCATGGGCATTTTAGTCATTT

       2348 TAAGTCCATT


Statistics
Matches: 46,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  27   46  1.00

ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41


Consensus pattern (27 bp):   
CATCCATGGGCATTTTAGTCATTTGCA
Done.