Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024217.1 Corchorus olitorius cultivar O-4 contig24250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9477
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:7366 original size:21 final size:20

Alignment explanation


    Indices: 7324--7372  Score: 62
    Period size: 21  Copynumber: 2.4  Consensus size: 20

       7314 TTGCCGCTGG

                         *      
       7324 GCGCCCAGGCGAATGCCTCA
          1 GCGCCCAGGCGAAAGCCTCA

                            *    
       7344 GCGCCCAGGCGACAAGGCTCA
          1 GCGCCCAGGCGA-AAGCCTCA

              *     
       7365 GCACCCAG
          1 GCGCCCAG

       7373 CTCGATCCCT


Statistics
Matches: 25,  Mismatches: 3, Indels: 1
        0.86            0.10        0.03

Matches are distributed among these distances:
  20   12  0.48
  21   13  0.52

ACGTcount: A:0.22, C:0.41, G:0.31, T:0.06


Consensus pattern (20 bp):   
GCGCCCAGGCGAAAGCCTCA
Done.