Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024219.1 Corchorus olitorius cultivar O-4 contig24252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4724
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34


Found at i:161 original size:20 final size:20

Alignment explanation


    Indices: 125--163  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        115 TTGGATCAAT

                                
        125 TTTTGCTTAAATATATGTTA
          1 TTTTGCTTAAATATATGTTA

                         *      
        145 TTTTG-TTAATATTTATGTT
          1 TTTTGCTTAA-ATATATGTT

        164 TTGAGTCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.26, C:0.03, G:0.10, T:0.62


Consensus pattern (20 bp):   
TTTTGCTTAAATATATGTTA

Found at i:326 original size:18 final size:19

Alignment explanation


    Indices: 292--328  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        282 GAAGTTCGTG

                      *        
        292 TTTGAAGACTTATTGAAGA
          1 TTTGAAGACTCATTGAAGA

                               
        311 TTTGAAGAC-CATTGAAGA
          1 TTTGAAGACTCATTGAAGA

        329 ATAATTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32


Consensus pattern (19 bp):   
TTTGAAGACTCATTGAAGA
Done.