Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024221.1 Corchorus olitorius cultivar O-4 contig24254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9039
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:2377 original size:20 final size:21

Alignment explanation


    Indices: 2339--2381  Score: 70
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       2329 CTAGCATATG

                          *      
       2339 ACTCAATTATTCAAGCAATAA
          1 ACTCAATTATTCAAACAATAA

                                 
       2360 ACTCAATTA-TCAAACAATAA
          1 ACTCAATTATTCAAACAATAA

              
       2380 AC
          1 AC

       2382 CTATCAAGTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  20   12  0.57
  21    9  0.43

ACGTcount: A:0.51, C:0.21, G:0.02, T:0.26


Consensus pattern (21 bp):   
ACTCAATTATTCAAACAATAA

Found at i:8707 original size:6 final size:6

Alignment explanation


    Indices: 8693--8728  Score: 63
    Period size: 6  Copynumber: 5.8  Consensus size: 6

       8683 AGTGCAAATT

                                                     
       8693 AAAATAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
          1 AAAA-AG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA

       8729 ATAATTCACA


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   6   25  0.86
   7    4  0.14

ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03


Consensus pattern (6 bp):   
AAAAAG

Done.