Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024224.1 Corchorus olitorius cultivar O-4 contig24257, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74270

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
653--694
15
2.7
15
92
3
66
64
14
9
11
1.50
5896--6035
35
4.0
34
81
8
165
39
17
14
29
1.89
5853--6027
72
2.4
71
83
6
210
39
16
15
28
1.89
6779--6809
15
2.1
15
93
0
53
58
19
6
16
1.59
7853--7878
8
3.2
8
100
0
52
0
11
15
73
1.11
10620--10675
21
2.6
22
77
8
71
3
37
19
39
1.69
12764--12788
8
3.1
8
100
0
50
24
24
16
36
1.94
21404--21444
21
1.9
21
90
5
64
48
0
4
46
1.23
21825--21867
21
2.0
21
86
0
59
25
11
30
32
1.91
21770--21968
101
2.0
101
90
0
317
31
12
24
32
1.91
21935--22010
21
3.6
21
94
0
125
27
14
23
34
1.94
21825--22153
143
2.3
143
90
0
514
29
12
23
34
1.92
22069--22174
21
5.0
21
90
0
167
26
15
22
35
1.93
33188--33216
14
2.0
15
93
6
51
62
3
6
27
1.37
34901--34982
42
2.0
42
85
0
110
31
15
19
32
1.93
37651--37686
13
2.7
13
91
4
54
2
0
16
80
0.83
44010--44447
164
2.7
163
90
2
684
31
18
18
31
1.95
47726--47767
23
2.0
21
86
13
59
50
14
14
21
1.78
47730--47776
23
2.0
23
83
0
58
59
14
10
14
1.61
53554--53977
107
4.0
107
95
1
735
29
12
18
40
1.87
54131--54452
178
1.8
178
94
0
572
29
16
10
43
1.81
65541--65582
15
2.7
15
92
3
66
11
9
14
64
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66775--66800
10
2.6
10
100
0
52
0
11
7
80
0.89

Tables:   1

The End!