Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024226.1 Corchorus olitorius cultivar O-4 contig24259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67818

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2628--2740
55
2.0
56
94
1
201
34
23
1
40
1.65
2819--2886
21
3.3
21
67
17
52
33
7
10
48
1.65
9561--10122
47
12.0
47
90
1
833
46
4
19
29
1.70
14561--14591
10
3.1
10
90
0
53
61
19
0
19
1.35
28813--28859
18
2.6
18
80
12
53
36
6
0
57
1.24
29680--29728
21
2.3
21
83
10
64
65
6
10
18
1.43
30472--30509
18
2.2
18
90
4
60
71
7
13
7
1.31
32219--32366
44
3.3
44
87
2
197
23
22
11
41
1.86
32610--32697
42
2.1
42
95
0
158
35
13
19
31
1.91
33146--33272
65
2.0
64
85
1
173
16
20
16
46
1.84
35227--35362
47
3.0
44
90
4
202
25
22
9
42
1.83
38414--38438
11
2.3
11
100
0
50
64
28
0
8
1.22
40173--40242
37
1.9
37
86
11
101
14
31
42
11
1.81
49739--49890
76
2.0
76
79
7
166
15
29
30
24
1.96
59395--59433
20
1.9
21
94
5
71
56
0
0
43
0.99
59651--59744
45
2.2
44
87
11
133
36
21
7
35
1.81
61494--61539
22
2.0
23
84
12
60
58
13
0
28
1.35
61715--61910
3
65.3
3
89
7
292
63
1
2
33
1.13
63544--63599
30
1.9
29
92
7
96
26
17
17
37
1.93
64042--64070
9
3.3
9
95
4
51
41
0
0
58
0.98
67714--67779
3
22.3
3
96
3
125
0
31
0
68
0.90
67774--67804
4
7.8
4
100
0
62
0
22
0
77
0.77

Tables:   1

The End!