genome.fa.s24228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024228.1 Corchorus olitorius cultivar O-4 contig24261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56109

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251--1298	2	25.0	2	87	8	73	52	0	0	47	1.00
3579--3612	17	2.0	17	100	0	68	23	11	17	47	1.81
7626--7663	18	2.1	18	90	0	58	5	34	26	34	1.79
7635--7683	6	8.2	6	79	0	53	2	34	28	34	1.69
7641--7684	12	3.7	12	81	0	61	0	34	27	38	1.57
7626--7683	24	2.4	24	88	0	80	3	34	25	36	1.73
7644--7691	24	2.0	24	91	0	78	2	33	25	39	1.67
8224--8252	15	2.0	15	93	6	51	58	0	0	41	0.98
8544--8615	31	2.3	31	77	13	85	61	9	4	25	1.45
8873--8901	2	14.5	2	100	0	58	48	0	0	51	1.00
9789--9840	19	2.7	19	77	11	61	51	0	1	46	1.12
9775--9853	12	6.2	12	73	21	63	49	1	1	48	1.17
9789--9850	14	4.2	15	80	14	67	50	0	1	48	1.10
10631--10707	31	2.6	32	84	10	94	29	23	10	36	1.88
17970--18000	14	2.2	14	94	0	53	25	0	32	41	1.56
19888--20007	41	2.9	42	73	8	120	30	17	25	25	1.97
20093--20979	38	23.9	38	79	10	785	27	20	18	33	1.96
20093--20980	76	12.0	76	79	9	886	27	20	18	33	1.96
20450--20576	64	2.0	64	89	3	193	25	22	18	32	1.97
20299--20948	216	3.0	216	84	4	785	27	20	18	33	1.96
20590--20856	140	1.9	140	88	3	403	26	19	19	34	1.96
20540--20901	178	2.0	179	81	4	419	28	20	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22638--22680	16	2.7	15	89	10	68	67	13	6	11	1.41
26409--26507	27	3.6	28	80	2	85	19	20	26	34	1.96
26434--26495	27	2.3	27	85	0	88	24	19	25	30	1.98
30014--30038	13	1.9	13	100	0	50	52	0	32	16	1.44
37877--37932	21	2.7	21	97	0	103	32	16	23	28	1.96
39898--39937	2	20.0	2	100	0	80	50	0	0	50	1.00
40568--40619	24	2.1	25	85	3	70	46	17	17	19	1.85
42572--42615	21	2.0	22	86	4	63	9	13	38	38	1.77
42574--42632	22	2.6	22	76	13	57	8	20	38	32	1.83
43299--43368	20	3.3	20	65	18	52	50	0	10	40	1.36
46863--46952	46	2.0	46	86	0	126	22	25	11	41	1.86
48205--48310	23	4.6	23	95	4	196	40	4	12	42	1.63
49017--49105	41	2.3	38	88	5	124	30	10	17	41	1.83
49179--49240	34	1.9	32	87	12	92	43	6	12	37	1.69
49334--49389	28	2.0	28	89	6	87	33	16	7	42	1.75

Tables:   1

The End!