Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024231.1 Corchorus olitorius cultivar O-4 contig24264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18522

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
939--985
10
4.6
10
84
5
58
34
0
8
57
1.29
885--966
31
2.6
31
75
9
78
28
4
8
58
1.48
940--985
21
2.2
20
84
3
56
34
0
8
56
1.30
1433--1491
16
3.7
15
76
10
64
42
35
15
6
1.73
1430--1523
32
2.9
32
85
3
127
39
36
19
5
1.74
1480--1538
16
3.7
16
84
8
68
33
42
18
5
1.72
1649--1700
27
1.9
27
88
0
77
34
26
5
32
1.80
3424--3471
20
2.5
19
80
12
53
27
2
37
33
1.69
6978--7042
32
2.0
32
90
0
103
29
24
12
33
1.92
9805--9928
13
8.8
13
67
19
61
35
10
2
51
1.49
9805--9840
14
2.6
14
86
4
56
41
5
2
50
1.40
9810--9971
44
3.7
44
88
4
222
35
9
3
51
1.52
9810--9971
87
1.9
88
84
6
222
35
9
3
51
1.52
9937--9998
27
2.3
27
86
5
81
41
4
6
46
1.51
10046--10329
134
2.1
133
92
1
462
23
25
22
28
1.99
11299--11373
27
2.7
27
83
2
78
16
18
21
44
1.87
15633--15729
44
2.3
42
85
8
126
25
18
10
45
1.81
15633--15753
42
2.8
43
83
3
129
25
19
11
42
1.85

Tables:   1

The End!