Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024232.1 Corchorus olitorius cultivar O-4 contig24265, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3136
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33


Found at i:2467 original size:28 final size:28

Alignment explanation


    Indices: 2436--2509  Score: 148
    Period size: 28  Copynumber: 2.6  Consensus size: 28

       2426 TATGGGCATA

                                        
       2436 AAATTACCGTTTTACCCTAAGAGTGACT
          1 AAATTACCGTTTTACCCTAAGAGTGACT

                                        
       2464 AAATTACCGTTTTACCCTAAGAGTGACT
          1 AAATTACCGTTTTACCCTAAGAGTGACT

                              
       2492 AAATTACCGTTTTACCCT
          1 AAATTACCGTTTTACCCT

       2510 TAGAAGGTTA


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   46  1.00

ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34


Consensus pattern (28 bp):   
AAATTACCGTTTTACCCTAAGAGTGACT
Done.