Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024233.1 Corchorus olitorius cultivar O-4 contig24266, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4426
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:858 original size:22 final size:22

Alignment explanation


    Indices: 827--870  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        817 TCTATTTAGT

                       **         
        827 TTTTGCGTTTTTGAAAAAAAAA
          1 TTTTGCGTTTTCAAAAAAAAAA

                 *                
        849 TTTTGTGTTTTCAAAAAAAAAA
          1 TTTTGCGTTTTCAAAAAAAAAA

        871 AGTTCTGCTC


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41


Consensus pattern (22 bp):   
TTTTGCGTTTTCAAAAAAAAAA

Found at i:3233 original size:18 final size:18

Alignment explanation


    Indices: 3210--3246  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       3200 AAAGGGTAGT

                     *  *     
       3210 TAAAAAAAATTGTTTTCA
          1 TAAAAAAAAGTGCTTTCA

                              
       3228 TAAAAAAAAGTGCTTTCA
          1 TAAAAAAAAGTGCTTTCA

             
       3246 T
          1 T

       3247 GCAAGAGGAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35


Consensus pattern (18 bp):   
TAAAAAAAAGTGCTTTCA
Done.