Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024236.1 Corchorus olitorius cultivar O-4 contig24269, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12184
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:2212 original size:19 final size:18

Alignment explanation


    Indices: 2179--2214  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2169 TTGAAATTAT

                              
       2179 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
       2197 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

       2215 TAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA

Found at i:10943 original size:21 final size:21

Alignment explanation


    Indices: 10917--10956  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

      10907 ATCAAAAATT

                                 
      10917 CCTTTTGTCATAAACTCACTC
          1 CCTTTTGTCATAAACTCACTC

                       *       
      10938 CCTTTTGTCATGAACTCAC
          1 CCTTTTGTCATAAACTCAC

      10957 AAGAACACCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.23, C:0.33, G:0.07, T:0.38


Consensus pattern (21 bp):   
CCTTTTGTCATAAACTCACTC
Done.