Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024237.1 Corchorus olitorius cultivar O-4 contig24270, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18482

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1445--1480
19
1.9
18
94
5
63
27
22
5
44
1.75
3725--3779
21
2.6
21
77
5
58
23
5
7
63
1.41
4636--4682
19
2.5
20
86
6
53
82
2
8
6
0.90
4636--4682
20
2.5
19
86
6
60
82
2
8
6
0.90
5769--6593
35
24.8
34
70
15
389
19
22
19
38
1.94
5803--6000
96
2.1
95
79
8
213
19
22
18
39
1.92
5754--6038
131
2.2
131
83
5
380
19
23
18
39
1.92
5769--6150
167
2.3
165
86
2
523
19
22
18
39
1.93
5973--6553
96
5.9
97
73
12
431
19
22
20
37
1.95
5935--6591
131
5.0
132
78
10
614
19
21
20
38
1.94
6067--6460
166
2.4
165
85
5
519
20
22
19
37
1.95
6398--6526
61
2.1
60
85
5
179
19
22
19
38
1.93
6568--6627
26
2.3
26
85
5
77
26
18
20
35
1.95
6577--6637
26
2.3
26
85
0
86
22
22
22
31
1.99
6612--6718
55
2.0
52
82
7
126
32
14
16
35
1.90
6713--6789
37
2.1
37
85
2
100
38
15
19
25
1.91
6767--6881
54
2.1
54
87
6
162
31
16
20
32
1.94
6918--7407
35
14.1
35
87
4
674
30
17
21
30
1.96
8108--8180
27
2.7
27
82
0
83
16
19
21
42
1.89
10105--10151
17
2.7
18
87
9
71
57
0
38
4
1.18
14696--14770
27
2.8
27
91
0
123
20
41
18
20
1.91
15573--15607
17
2.1
17
94
0
61
20
8
17
54
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16755--16789
6
5.8
6
96
0
61
20
11
51
17
1.75
17157--17302
32
4.5
32
90
1
220
34
23
16
24
1.95

Tables:   1

The End!