Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024240.1 Corchorus olitorius cultivar O-4 contig24273, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2225
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:306 original size:15 final size:16

Alignment explanation


    Indices: 279--308  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

        269 CTTTGCTTTG

                            
        279 TTTTCTAGTTTAATTA
          1 TTTTCTAGTTTAATTA

                           
        295 TTTTCT-GTTTAATT
          1 TTTTCTAGTTTAATT

        309 GCTTTCTGTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67


Consensus pattern (16 bp):   
TTTTCTAGTTTAATTA
Done.