Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024242.1 Corchorus olitorius cultivar O-4 contig24275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10549

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1370--1417
16
3.1
15
82
8
53
12
10
16
60
1.58
1700--1748
25
2.0
25
95
0
89
40
14
10
34
1.79
4399--4428
15
1.9
16
93
6
53
20
6
6
66
1.38
4609--4731
61
2.0
61
100
0
246
32
11
27
28
1.91
6437--6495
6
9.7
6
80
8
50
81
16
1
0
0.78
6437--6496
7
8.7
7
77
12
54
81
16
1
0
0.77
6496--6532
19
1.9
19
94
0
65
56
0
21
21
1.42
6793--6826
8
4.0
8
85
14
50
73
0
14
11
1.10
6882--6909
14
2.0
14
100
0
56
71
0
14
14
1.15
7853--8237
148
2.6
147
92
0
646
28
20
16
34
1.94
8371--9304
40
23.3
40
89
3
1267
32
20
9
38
1.84
9090--9328
40
6.0
41
90
1
138
31
20
11
36
1.88

Tables:   1

The End!