Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024244.1 Corchorus olitorius cultivar O-4 contig24277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5568
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:1419 original size:21 final size:21

Alignment explanation


    Indices: 1392--1440  Score: 71
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1382 ATGGAATGGC

                                 
       1392 GATGGCACAGGCATAACCGGT
          1 GATGGCACAGGCATAACCGGT

             *      *   *        
       1413 GGTGGCACGGGCTTAACCGGT
          1 GATGGCACAGGCATAACCGGT

                   
       1434 GATGGCA
          1 GATGGCA

       1441 TGGTGAATGG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.22, C:0.22, G:0.39, T:0.16


Consensus pattern (21 bp):   
GATGGCACAGGCATAACCGGT

Found at i:5216 original size:15 final size:16

Alignment explanation


    Indices: 5192--5231  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       5182 AGAGGTTGAA

                 *          
       5192 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       5207 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       5223 AGAAAACAA
          1 AGAAAACAA

       5232 AGCAAAGTAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.