Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024247.1 Corchorus olitorius cultivar O-4 contig24280, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:1118 original size:21 final size:22

Alignment explanation


    Indices: 1083--1124  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

       1073 GTAGGCTTTA

                *                 
       1083 ATGGGATGCATGAATGAATGCC
          1 ATGGCATGCATGAATGAATGCC

                                 
       1105 ATGGCATG-ATGAATGAATGC
          1 ATGGCATGCATGAATGAATGC

       1125 ATGAGGCAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.33, C:0.12, G:0.31, T:0.24


Consensus pattern (22 bp):   
ATGGCATGCATGAATGAATGCC
Done.