Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002425.1 Corchorus olitorius cultivar O-4 contig02425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5640
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20


Found at i:260 original size:47 final size:47

Alignment explanation


    Indices: 186--351  Score: 269
    Period size: 47  Copynumber: 3.5  Consensus size: 47

        176 TGCCGCAGCG

                                          *     *    **    
        186 GATTGCCCGGTGCGCATCAATGCGCACCCTACGGTGCTGGCGACGTC
          1 GATTGCCCGGTGCGCATCAATGCGCACCCTGCGGTGTTGGCCCCGTC

                *       *                          *       
        233 GATTACCCGGTGTGCATCAATGCGCACCCTGCGGTGTTGACCCCGTC
          1 GATTGCCCGGTGCGCATCAATGCGCACCCTGCGGTGTTGGCCCCGTC

                                                           
        280 GATTGCCCGGTGCGCATCAATGCGCACCCTGCGGTGTTGGCCCCGTC
          1 GATTGCCCGGTGCGCATCAATGCGCACCCTGCGGTGTTGGCCCCGTC

                                     
        327 GATTGCCCGGTGCGCATCAATGCGC
          1 GATTGCCCGGTGCGCATCAATGCGC

        352 GCTCTGTCAT


Statistics
Matches: 109,  Mismatches: 10, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  47  109  1.00

ACGTcount: A:0.14, C:0.34, G:0.31, T:0.21


Consensus pattern (47 bp):   
GATTGCCCGGTGCGCATCAATGCGCACCCTGCGGTGTTGGCCCCGTC
Done.