Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024250.1 Corchorus olitorius cultivar O-4 contig24283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55559

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3972--4042
31
2.3
32
87
7
110
33
19
23
22
1.97
5343--5380
19
2.1
19
95
5
69
42
15
0
42
1.47
10090--10131
20
2.1
20
100
0
84
47
14
11
26
1.78
20324--20462
42
3.3
42
95
0
251
35
17
12
34
1.88
20260--20568
42
7.4
41
80
7
225
35
14
15
33
1.89
20273--20563
84
3.5
82
80
7
275
35
15
16
33
1.90
21109--21169
22
2.7
23
79
5
61
55
24
6
13
1.61
26833--26930
49
2.0
49
95
0
178
33
28
16
21
1.95
30805--30853
22
2.2
22
82
7
55
10
4
6
79
1.03
33476--33538
26
2.4
27
81
2
65
19
14
23
42
1.87
35920--35978
24
2.5
24
81
8
68
8
20
16
54
1.68
37697--37737
21
1.9
22
85
5
57
31
24
0
43
1.54
43998--44066
25
3.0
23
87
6
95
4
13
13
69
1.33
55517--55559
2
21.5
2
100
0
86
48
0
51
0
1.00

Tables:   1

The End!