Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024251.1 Corchorus olitorius cultivar O-4 contig24284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60952

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
277--315
2
19.5
2
100
0
78
48
0
0
51
1.00
870--1237
63
5.9
63
90
3
559
24
19
16
40
1.91
803--1237
126
3.5
127
87
5
594
23
19
16
40
1.91
803--1237
189
2.4
182
86
6
585
23
19
16
40
1.91
870--1297
189
2.3
185
83
8
549
24
18
16
40
1.90
1574--1713
63
2.2
66
88
3
205
30
19
4
46
1.69
4360--4404
12
3.8
12
100
0
90
24
22
17
35
1.95
14339--14371
15
2.2
15
94
0
57
21
0
30
48
1.50
15386--15459
19
3.8
19
87
7
103
36
9
17
36
1.82
15643--15683
3
14.0
3
94
5
75
34
0
0
65
0.93
16065--16126
20
3.0
20
86
4
97
33
20
9
35
1.86
19788--19879
15
5.9
15
82
12
96
38
5
30
26
1.79
19788--19875
30
2.8
32
81
8
108
38
5
30
25
1.79
23885--23979
43
2.2
44
84
7
131
27
8
26
37
1.85
23864--23985
43
2.8
42
81
10
129
26
7
25
40
1.81
25000--25056
25
2.4
24
88
5
80
59
3
5
31
1.36
44097--45045
439
2.2
440
90
1
1467
26
12
17
42
1.85
48052--48163
56
2.0
56
100
0
224
30
8
25
35
1.86
53303--53377
27
2.7
27
91
2
123
18
14
24
42
1.88

Tables:   1

The End!