Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024254.1 Corchorus olitorius cultivar O-4 contig24287, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47110

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
961--1125
83
2.0
83
98
0
321
28
32
18
20
1.97
8868--8904
19
1.9
19
100
0
74
16
37
13
32
1.87
12946--12996
24
2.1
25
85
3
68
17
5
5
70
1.28
15223--15599
191
2.0
190
97
1
711
43
12
16
27
1.84
16375--16631
106
2.4
105
81
11
281
38
9
11
41
1.73
16944--17272
84
3.9
82
87
6
439
40
25
10
23
1.86
16944--17276
43
7.9
43
76
9
310
39
25
10
24
1.87
16944--17268
168
1.9
167
89
3
501
40
25
10
23
1.86
17581--17907
58
5.6
58
92
0
546
24
21
15
38
1.92
17914--18304
54
7.6
54
79
13
446
32
22
14
29
1.94
17914--18304
97
3.9
99
85
7
484
32
22
14
29
1.94
18052--18142
45
2.0
45
95
0
164
29
24
15
30
1.95
18097--18304
55
3.8
53
89
6
317
32
22
14
30
1.94
18311--18344
16
2.1
17
88
5
52
41
5
20
32
1.76
18310--18380
24
2.9
23
77
10
70
42
4
22
30
1.73
18359--18394
9
4.1
9
89
3
56
41
0
13
44
1.44
20167--20197
10
3.1
10
95
0
53
54
0
0
45
0.99
40443--40529
31
2.8
31
94
0
156
25
26
29
18
1.98
45112--45147
16
2.2
17
95
5
65
63
5
0
30
1.17

Tables:   1

The End!