Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024257.1 Corchorus olitorius cultivar O-4 contig24290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19817
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29


Found at i:8736 original size:19 final size:19

Alignment explanation


    Indices: 8714--8764  Score: 61
    Period size: 19  Copynumber: 2.7  Consensus size: 19

       8704 GGGCTGAAAT

                               
       8714 TAATTAATTATTAATTAAA
          1 TAATTAATTATTAATTAAA

                         **     
       8733 TAA-TAATTATTTCCTTAAA
          1 TAATTAATTA-TTAATTAAA

                          
       8752 TAATT-ATTATTAA
          1 TAATTAATTATTAA

       8765 AAATCCCACA


Statistics
Matches: 26,  Mismatches: 4, Indels: 5
        0.74            0.11        0.14

Matches are distributed among these distances:
  18    8  0.31
  19   17  0.65
  20    1  0.04

ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49


Consensus pattern (19 bp):   
TAATTAATTATTAATTAAA
Done.