Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024261.1 Corchorus olitorius cultivar O-4 contig24294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26830

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
591--620
15
2.0
15
93
0
51
43
26
10
20
1.83
3210--4175
148
6.6
141
85
5
998
49
7
20
23
1.73
3207--4155
195
4.9
189
85
6
1051
49
6
20
23
1.72
3210--4155
343
2.8
343
94
0
1651
49
6
20
23
1.72
3210--4155
101
9.7
95
78
9
715
49
6
20
23
1.72
4166--4342
22
8.1
22
86
1
239
56
6
24
12
1.59
4166--4340
87
2.0
87
86
0
242
56
6
24
12
1.59
4316--4416
47
2.2
47
83
11
122
55
3
19
20
1.59
9960--9995
19
1.9
18
88
5
54
33
25
2
38
1.70
9960--10006
11
4.7
10
80
17
53
31
23
6
38
1.80
12629--12680
21
2.4
22
83
3
79
11
28
13
46
1.78
18613--18661
22
2.2
22
96
0
89
65
8
8
18
1.44
18623--18661
13
3.3
13
73
26
50
66
5
7
20
1.36
19235--19294
29
2.0
30
87
6
86
38
8
18
35
1.81
20805--20840
19
1.9
18
88
5
54
33
25
2
38
1.70
20805--20851
11
4.7
10
80
17
53
31
23
6
38
1.80
22988--23029
21
2.0
21
95
0
75
19
16
28
35
1.93
23219--23348
65
2.0
65
93
0
224
21
27
30
20
1.98
24366--24412
26
1.9
23
87
12
67
27
27
4
40
1.75

Tables:   1

The End!