Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024262.1 Corchorus olitorius cultivar O-4 contig24295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39906

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
372--413
15
2.7
15
88
3
66
11
9
14
64
1.50
4172--4502
39
8.6
38
81
7
280
24
19
16
38
1.92
4184--4502
77
4.1
77
80
7
344
23
20
17
38
1.93
4472--4528
26
2.2
26
96
0
105
28
22
14
35
1.93
4472--4539
26
2.6
26
90
4
93
26
23
13
36
1.92
8857--9136
140
2.0
140
97
1
535
35
14
11
39
1.82
14735--14759
9
2.8
9
100
0
50
80
20
0
0
0.72
17457--17525
23
3.4
19
80
20
70
40
0
0
59
0.97
17464--17529
10
7.2
10
73
22
56
42
0
0
57
0.98
17448--17529
25
3.2
25
82
8
85
40
0
0
59
0.97
17473--17544
7
10.1
7
74
24
62
44
0
0
55
0.99
17465--17545
7
12.0
7
73
11
53
45
0
0
54
0.99
20193--20233
21
2.0
21
85
9
57
26
19
9
43
1.82
23029--23070
23
1.9
22
90
9
68
52
7
11
28
1.64
29576--29604
15
1.9
15
100
0
58
13
6
6
72
1.26
31037--31075
18
2.2
18
100
0
78
56
0
10
33
1.33
39192--39244
20
2.7
20
88
5
72
79
13
3
3
1.01
39192--39244
6
8.2
6
80
15
61
79
13
3
3
1.01
39192--39244
26
2.0
26
89
7
81
79
13
3
3
1.01
39192--39244
14
4.1
12
83
13
61
79
13
3
3
1.01

Tables:   1

The End!