Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024264.1 Corchorus olitorius cultivar O-4 contig24297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24548

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2881--2929
2
24.5
2
87
0
71
46
4
2
46
1.33
2881--2929
18
2.7
18
93
0
89
46
4
2
46
1.33
19371--19554
52
3.6
51
87
7
266
27
25
10
36
1.89
19397--19554
50
3.1
50
95
3
289
27
25
11
34
1.91
19610--19747
50
2.8
50
98
0
267
27
13
28
29
1.94
20334--20533
50
4.0
50
94
0
319
35
13
18
33
1.89
20813--20837
1
25.0
1
100
0
50
0
0
0
100
0.00
21129--21165
18
2.1
17
90
5
56
16
0
10
72
1.10
21562--21615
8
7.0
8
78
16
60
9
16
0
74
1.07
21576--21604
9
3.3
9
95
4
51
10
10
0
79
0.94
21576--21611
17
2.1
17
94
0
63
8
13
0
77
0.98
21561--21593
14
2.4
14
94
0
57
12
15
0
72
1.12
21977--22105
50
2.6
50
87
0
177
32
28
13
25
1.93
22389--22488
28
3.6
27
81
6
94
19
18
24
39
1.92
22412--22523
27
4.1
27
78
4
102
16
20
25
36
1.94

Tables:   1

The End!