Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024269.1 Corchorus olitorius cultivar O-4 contig24302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19657

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
311--373
32
2.0
32
100
0
126
34
36
9
19
1.84
790--827
2
19.0
2
100
0
76
50
0
0
50
1.00
5520--6158
22
29.1
21
66
16
119
38
16
8
37
1.79
5779--5830
21
2.4
22
81
9
63
38
15
11
34
1.83
5953--6024
21
3.4
21
69
3
72
38
15
12
33
1.85
6040--6141
44
2.3
44
85
5
136
40
14
5
39
1.71
6145--6258
61
1.9
58
84
8
149
38
21
7
33
1.80
6202--6360
22
7.4
22
68
10
78
35
16
11
35
1.86
6393--6742
22
15.8
22
74
8
207
35
17
10
36
1.85
6393--6719
43
7.4
44
74
11
163
34
16
11
37
1.84
6574--6627
27
2.0
27
92
0
90
33
12
5
48
1.65
6642--6767
22
5.8
22
80
10
134
42
17
7
32
1.78
6642--6767
44
2.9
44
82
10
152
42
17
7
32
1.78
6958--6989
2
16.0
2
93
0
55
50
3
0
46
1.17
9883--9917
16
2.2
16
100
0
70
22
0
5
71
1.07
10605--10640
2
18.0
2
100
0
72
50
0
0
50
1.00
16306--16345
13
3.2
13
89
10
57
45
0
0
55
0.99
16788--16851
24
2.6
24
97
2
119
20
21
32
25
1.97

Tables:   1

The End!