Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002427.1 Corchorus olitorius cultivar O-4 contig02427, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 651

Length: 1085
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31


Found at i:529 original size:19 final size:19

Alignment explanation


    Indices: 505--544  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        495 CGCTTTTACT

                    *      *   
        505 TTATTTTATAAATTTCTAA
          1 TTATTTTAGAAATTTATAA

                               
        524 TTATTTTAGAAATTTATAA
          1 TTATTTTAGAAATTTATAA

              
        543 TT
          1 TT

        545 TCTGGATTAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57


Consensus pattern (19 bp):   
TTATTTTAGAAATTTATAA

Found at i:618 original size:13 final size:14

Alignment explanation


    Indices: 580--622  Score: 77
    Period size: 14  Copynumber: 3.1  Consensus size: 14

        570 TATATGATAT

                 *        
        580 ATGATAATTTTTGA
          1 ATGATGATTTTTGA

                          
        594 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

                          
        608 ATGATGATTTTTGA
          1 ATGATGATTTTTGA

             
        622 A
          1 A

        623 CTTTCCATAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  14   28  1.00

ACGTcount: A:0.33, C:0.00, G:0.19, T:0.49


Consensus pattern (14 bp):   
ATGATGATTTTTGA
Done.